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Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes

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10.3389/fgene.2021.635601
Johansson, Tiira; Koskela, Satu; Yohannes, Dawit A.; Partanen, Jukka; Saavalainen, Paivi
Frontiers in Genetics2021

3 ' RNA Sequencing Accurately Classifies Formalin-Fixed Paraffin-Embedded Uterine Leiomyomas

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10.3390/cancers12123839
Mehine, Miika; Khamaiseh, Sara; Ahvenainen, Terhi; Heikkinen, Tuomas; Äyräväinen, Anna; Pakarinen, P...
Cancers2020

Quantifying RNA synthesis at rate-limiting steps of transcription using nascent RNA-sequencing data

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10.1016/j.xpro.2021.101036
Adelina Rabenius; Sajitha Chandrakumaran; Lea Sistonen; Anniina Vihervaara
STAR protocols2022

mRNA Extraction from Gill Tissue for RNA-sequencing

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10.21769/BioProtoc.3539
Verta, Jukka-Pekka; Jones, Felicity
Bio-Protocol2020

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression

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10.3389/fimmu.2021.629059
Johansson, Tiira; Yohannes, Dawit A.; Koskela, Satu; Partanen, Jukka; Saavalainen, Paivi
Frontiers in Immunology2021

Tumor RNA Sequencing Identifies a Group of Patients with Mycosis Fungoides with Failure of Skin-Directed Therapies

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10.1016/j.jid.2024.06.1292
Häyrinen, Marjaana; Teppo, Hanna-Riikka; Väkevä, Liisa; Ranki, Annamari; Barton, Henry J.; Porvari, ...
Journal of investigative dermatology2025

RNA sequencing analysis reveals distinct gene expression patterns in infrapatellar fat pads of patients with end-stage osteoarthritis or rheumatoid arthritis

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10.1016/j.bbalip.2024.159576
Mustonen, Anne-Mari; Malinen, Marjo; Paakinaho, Ville; Lehenkari, Petri; Palosaari, Sanna; Kärjä, Ve...
Biochimica et biophysica acta: molecular and cell biology of lipids2024

Co-extraction of genomic DNA & total RNA from recalcitrant woody tissues for next-generation sequencing studies

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10.4155/fsoa-2018-0026
Zeng, Zhen; Raffaello, Tommaso; Liu, Mengxia; Asiegbu, Frederick Obioma
Future Science OA2018

YerA41, a Yersinia ruckeri Bacteriophage: Determination of a Non-Sequencable DNA Bacteriophage Genome via RNA-Sequencing

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10.3390/v12060620
Leskinen, Katarzyna; Pajunen, Maria I.; Vilanova, Miguel Vincente Gomez-Raya; Kiljunen, Saija; Nelso...
Viruses2020

CLOUDRNASPADES:Isoform assembly using bulk barcoded RNA sequencing data

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10.1093/bioinformatics/btad781
Meleshko, Dmitry; Prjbelski, Andrey D.; Raiko, Mikhail; Tomescu, Alexandru I.; Tilgner, Hagen; Hajir...
Bioinformatics2024

Targeted RNA-Based Oxford Nanopore Sequencing for Typing 12 Classical HLA Genes

Referentgranskad
Öppen tillgång
DOI
10.3389/fgene.2021.635601
2021

3 ' RNA Sequencing Accurately Classifies Formalin-Fixed Paraffin-Embedded Uterine Leiomyomas

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Öppen tillgång
DOI
10.3390/cancers12123839
2020

Quantifying RNA synthesis at rate-limiting steps of transcription using nascent RNA-sequencing data

Referentgranskad
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DOI
10.1016/j.xpro.2021.101036
2022

mRNA Extraction from Gill Tissue for RNA-sequencing

Referentgranskad
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DOI
10.21769/BioProtoc.3539
2020

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression

Referentgranskad
Öppen tillgång
DOI
10.3389/fimmu.2021.629059
2021

Tumor RNA Sequencing Identifies a Group of Patients with Mycosis Fungoides with Failure of Skin-Directed Therapies

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Öppen tillgång
DOI
10.1016/j.jid.2024.06.1292
2025

RNA sequencing analysis reveals distinct gene expression patterns in infrapatellar fat pads of patients with end-stage osteoarthritis or rheumatoid arthritis

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Öppen tillgång
DOI
10.1016/j.bbalip.2024.159576
2024

Co-extraction of genomic DNA & total RNA from recalcitrant woody tissues for next-generation sequencing studies

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DOI
10.4155/fsoa-2018-0026
2018

YerA41, a Yersinia ruckeri Bacteriophage: Determination of a Non-Sequencable DNA Bacteriophage Genome via RNA-Sequencing

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DOI
10.3390/v12060620
2020

CLOUDRNASPADES:Isoform assembly using bulk barcoded RNA sequencing data

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DOI
10.1093/bioinformatics/btad781
2024